Publications

Peer-reviewed open access publications

• E, J., Stransky, M., Jurek, Z. et al. Effects of radiation damage and inelastic scattering on single-particle imaging of hydrated proteins with an X-ray Free-Electron Laser. Sci Rep 11, 17976 (2021), DOI: https://doi.org/10.1038/s41598-021-97142-5
• M. Beg, J. Taka, T. Kluyver, A. Konovalov, M. Ragan-Kelley, N.M. Thiery, H. Fangohr, Using Jupyter for Reproducible Scientific Workflows, in Computing in Science & Engineering, vol. 23, no. 2, pp. 36-46, 1 March-April 2021, DOI: 10.1109/MCSE.2021.3052101 – Download the full article here.
• M. Manfredda, A. Hafner, S. Gerusina, N. Mahne, A. Simoncig, M. Zangrando, and L. Raimondi WISER wavefront propagation simulation code: advances and applications, Proc. SPIE 11493, Advances in Computational Methods for X-Ray Optics V, 114930B (16 September 2020); https://doi.org/10.1117/12.2568574
• A. Götz, J. Bodera Sempere, A. Campbell, A. de Maria, M. del Rio, R. Dimper, J. Kieffer, A.Solé, T. Vincent; S. Caunt, J. Hall, J. F. Perrin, N. Carboni, A.Hafner, R. Pugliese, M. Bertelsen, T. H. Rod, T. S. Richter, J. Taylor, J. C. E, H. Fangohr, C. Fortmann-Grote, T. Kluyver, R. Rosca, F. Gliksohn, L. Schrettner, Enabling Open Science for Photon and Neutron Sources, ICALEPCS2019 Proceedings, JACoW Publishing, 30 August 2020, DOI: https://doi.org/10.18429/JACoW-ICALEPCS2019-TUBPL02

• H. Fangohr, M. Beg, M. Bergemann, V. Bondar, S. Brockhauser C. Carinan, R. Costa, F. Dall’Antonia, C. Danilevski, J. C. E, W. Ehsan, S. G. Esenov, R. Fabbri, S. Fangohr, G. Flucke, C. Fortmann, D. Fulla Marsa, G. Giovanetti, D. Goeries, S. Hauf, D. G. Hickin, T. Jarosiewicz5, E. Kamil, M. Karnevskiy, Y. Kirienko, A. Klimovskaia, T. A. Kluyver, M. Kuster, L. Le Guyader, A. Madsen, L. G. Maia, D. Mamchyk, L. Mercadier, T. Michelat, J. Möller, I. Mohacsi, A. Parenti, M. Reiser, R. Rosca, D. B. Rueck, T. Rüter, H. Santos, R. Schaffer, A. Scherz, M. Scholz, A. Silenzi, M. Spirzewski, J. Sztuk, J. Szuba, S. Trojanowski, K. Wrona, A. A. Yaroslavtsev, J. Zhu, J. Reppin, F. Schlünzen, M. Schuh, E. Fernandez-del-Castillo, G. Sipos, T. H. Rod, J. R. Selknaes, J. W. Taylor, A. Campbell, A. Götz, J. Kieffer, J. Hall, E. Pellegrini, J. F. Perrin, Data exploration and analysis with Jupyter Notebooks, ICALEPCS2019 Proceedings, JACoW Publishing, 30 August 2020, DOI: https://doi.org/10.18429/JACoW-ICALEPCS2019-TUCPR02

• J. C. E, A. Hafner, T. Kluyver, M. Bertelsen, M. Upadhyay Kahaly, Z. Lecz, S. Nourbakhsh, A. P. Mancuso, and C. Fortmann-Grote, VINYL: The VIrtual Neutron and x-raY Laboratory and its applications, Proc. SPIE 11493, Advances in Computational Methods for X-Ray Optics V, 114930Z (21 August 2020); https://doi.org/10.1117/12.2570378
• R. Dimper, A. Götz, A. De Maria, M. Solé V.A., Chaillet, B. Lebayle, ESRF Data Policy, Storage, and Services, Synchrotron Radiation News, Volume 32, 2019 – Issue 3, DOI: https://doi.org/10.1080/08940886.2019.1608119

Green open access publications

• Götz, Andy, Helliwell, John, Richter, Tobias, & Taylor, Jonathan. (2021). The vital role of primary experimental data for ensuring trust in (Photon & Neutron) science. Zenodo. DOI: https://doi.org/10.5281/zenodo.5155882
• C. Fortmann-Grote, M. Bertelsen, J. E, libpyvinyl-v0.0.2, 6 November 2020, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.4245765
• J. E, C. Fortmann-Grote, SimEx, 6 November 2020, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.4249615
• A. Hafner, Demonstration of OASYS as a remote application (web service), 6 November 2020, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.4250966
• N. Carboni, A. Götz, PaNOSC key achievements in first 18 months, 5 November 2020, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.4247623
• K. T. Butler, M. Duc Le, Data/code for Interpretable, calibrated neural networks for analysis and understanding of neutron spectra, 14 October 2020, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.4270057
• R. Pugliese, G. Kourousias, F. Billè, M. De Simone, A. Olivo, D. Favretto, M. Del Bianco, R. Passuello, Remotisation technologies for enabling access; from software and robots to protocols and policies, 12 October 2020, PaNOSC on Zenodo, DOI: ttps://doi.org/10.5281/zenodo.4081592
• A.Götz, J.-F. Perrin, H. Fangohr, D. Salvat, F.  Gliksohn, A.  Markvardsen,  A. McBirnie, A. Gonzalez-Beltran, J. Taylor, B. Matthews, PaNOSC FAIR Research Data Policy framework, May 2020, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.3862701
• C. Fortmann-Grote, SIMEX test data, April 2020, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.3750541

• A. Götz, A. Petzold, A. Asmi, N. Blomberg, G. Lamanna, R. Dekker, ESFRI cluster projects – Position papers on expectations and planned contributions to the EOSC, PaNOSC on Zenodo, DOI; https://doi.org/10.5281/zenodo.3675081
• A. Hafner, Example Photon raytracing openPMD data, November 2019, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.3532902
• J.C.E, Example dataset for openPMD-conform molecular dynamics data (MD domain extension), November 2019, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.3525951
• C. Fortmann-Grote, Example dataset for openPMD conform wavefront propagation data (wavefront domain extension), November 2019, PaNOSC on Zenodo, DOI: https://doi.org/10.5281/zenodo.3524710